PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g029770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25838.9 Da PI: 4.1272 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.1 | 9.6e-08 | 14 | 68 | 2 | 50 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.......k 50 G+rF Ptde+l+ yL + v+++++ + + i+ +iy +Pw+L + k Sopen10g029770.1 14 ELGVRFLPTDEQLI-SYLIRFVASNNFIC-NDIPFENIYGRkKPWELMEaeyslddK 68 57************.9**********988.5699999996549****7334444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-8 | 10 | 62 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRIGRINDDS PDLELGVRFL PTDEQLISYL IRFVASNNFI CNDIPFENIY GRKKPWELME 60 AEYSLDDKVI KPLKNRGIMK HEDVVLCFIR RKESGHGNDD DDDNDDDTQP QGPNETGYGT 120 DQLAQQMVDN SVQNVEETTS TGNVLLKLKY PNFLIHLEGL QVVVLWLAHL DTFPQSVLQF 180 AEEVDERYDN TNQLPIWADD HQLPQQIVMF VMMNEGNINA ESVVP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-133 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027768232.1 | 6e-41 | NAC domain-containing protein 2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14213 | 4 | 8 |