PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 361aa    MW: 39594.1 Da    PI: 6.2958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09204251455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Sopen10g029710.1 204 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 251
                       8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-9198255No hitNo description
SuperFamilySSF474593.93E-15198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDNLIESIEA GGARSENCGA RMGEIGDGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE  60
LLVQSPETDK IASDKLAISE PHYRYPPPPP IFPSDIALID RASKFSVFAA AGNSPESNST  120
LSNSGSKSLF VKQEPLDSEC NHNSSPATSN PLVNQKSTKR KEREKKVKET SKKGKKSAND  180
TSEDGGEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL  240
DEIINHVQSL QRQVEFLSMR LAAANPRVDF NLDSLFAAER SGSHVESNLQ DMVVPPIWAE  300
GQSSGNRNQY QHLWHFEGFH QPAWGRLEDN SSFVTPENSL LTYDSSANSA SLHPNQLKME  360
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055898.10.0transcription factor bHLH48-like
TrEMBLA0A0V0IJE90.0A0A0V0IJE9_SOLCH; Putative transcription factor bHLH48-like
STRINGPGSC0003DMT4000211300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-75bHLH family protein