PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029320.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 372aa    MW: 40068.9 Da    PI: 8.8963
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029320.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.3e-4275150176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l+efD++krsCrrrLa hnerrrk+
  Sopen10g029320.1  75 RCQVEGCQADLSDAKAYYSRHKVCGMHSKSPTVVVAGLEQRFCQQCSRFHQLTEFDQGKRSCRRRLACHNERRRKP 150
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3569137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1273150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-3974153IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3176149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELGSVSSSG NSSSSDSLNG LKFGKKIYFG NVGVGVQVKN GSGSSPVNGD GNLPPAPATT  60
KRGRGGLVQG GHPPRCQVEG CQADLSDAKA YYSRHKVCGM HSKSPTVVVA GLEQRFCQQC  120
SRFHQLTEFD QGKRSCRRRL ACHNERRRKP PSGSLFSTHY GNLSSSIFEN NSSRSGSFLV  180
DFSSHQNVNE SSWPNTRASE QGWDHQSSGK FLQRPWLNNS ENAASELVLQ GSATRTSYHG  240
VPSGDYFPGV SDSSGALSLL SNRSWGSRNR PPSLGVNSQV HIDGVHTIQP SGSHGAPTNH  300
FSSRSLSFKG NEASSSSHEM PPDLGLGQML QASDNPYCGE LGMAQHGDGR QYMELDQSKG  360
YHPSVQNVHW TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30761491184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055641.10.0squamosa promoter-binding-like protein 9
TrEMBLM1ATC30.0M1ATC3_SOLTU; Uncharacterized protein
STRINGSolyc10g078700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-47squamosa promoter binding protein-like 15