PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029240.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 274aa    MW: 30963.6 Da    PI: 6.7679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029240.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-162575255
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +g+W AeI+d      k+ r +lg+f tae+Aa+a+++a+  l+g
  Sopen10g029240.1 25 KFVGVRQRS-SGKWIAEIKDT---ThKKIRMWLGTFETAEDAARAYDQAACLLRG 75
                      799***999.7*********3...2446**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-272582No hitNo description
SMARTSM003802.5E-332589IPR001471AP2/ERF domain
PfamPF008478.1E-112575IPR001471AP2/ERF domain
PROSITE profilePS5103219.2822583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-272583IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-192583IPR016177DNA-binding domain
PRINTSPR003672.7E-72637IPR001471AP2/ERF domain
PRINTSPR003672.7E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKKVTKSIKG RRRSNNSHVN SNSNKFVGVR QRSSGKWIAE IKDTTHKKIR MWLGTFETAE  60
DAARAYDQAA CLLRGSNTRT NFVTTRVSAD SQLAYRIKNL IDSKKIAKQN KQGNSVFGST  120
CSEKIQESHE QVLNSSDDKT LYNKPTTITT PMTQSQTSCD RLYEPSLTTC HHLNSSEADN  180
NDFYKPDMMS CSSSCSSQPQ VSWGFEFAEE LLDFPIMDES TSEMGCTEFE RMKVERQISA  240
SLYAVNGVQE YMENVHDIDD LSLWDLPPLC SLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-152682359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-152682662ATERF1
3gcc_A2e-152682662ATERF1
5wx9_A5e-151982871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055567.10.0ethylene-responsive transcription factor ERN1-like
SwissprotA2Q5W11e-70ERN1_MEDTR; Ethylene-responsive transcription factor ERN1
TrEMBLM1AF961e-179M1AF96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215351e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-25related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]