PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g028040.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 180aa MW: 20388 Da PI: 8.3655

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g028040.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	111.3	1.6e-34	36	106	4	76
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 r p+ +Er +nk+RE+ RR +a ki+aGLRa+Gnyklpk+aD n+ l ALc+eAGw ve+DGt k p Sopen10g028040.1 36 FRYPSDRERQKNKQREKNRRRVAHKIFAGLRAHGNYKLPKHADTNDLLMALCKEAGWHVEEDGTIKGK--DPV 106 5899************************************************************7544..333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.7E-31	37	124	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MGEDKKISGV RGCIKTSRGP WLVHRTAKDG SVVTRFRYPS DRERQKNKQR EKNRRRVAHK 60 IFAGLRAHGN YKLPKHADTN DLLMALCKEA GWHVEEDGTI KGKDPVKDLP RLIDVDSAQV 120 SMEDQTKDGE YCKCEDQIKD GEYYCKCEVD MNNAETEKGR PEGLLTSSAF DVNLTLSLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-173	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055473.1	1e-133	protein BRASSINAZOLE-RESISTANT 2-like
Swissprot	Q9S7F3	2e-14	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	A0A3Q7IIT4	1e-128	A0A3Q7IIT4_SOLLC; Uncharacterized protein
STRING	Solyc10g076390.1.1	1e-129	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	1e-16	BES1 family protein