PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g028020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 441aa    MW: 50441.1 Da    PI: 4.1485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g028020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1867125155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg++ ta +Aa a+++a+k ++g
  Sopen10g028020.1  67 CKYRGVRQRT-WGKWVAEIREpVYISGqyKSkgKRLWLGTYSTAGDAAVAYDEAAKVMYG 125
                       79*****999.**********666677794456***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-2967135No hitNo description
PfamPF008475.7E-1167125IPR001471AP2/ERF domain
SMARTSM003807.6E-3468139IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1968135IPR016177DNA-binding domain
PROSITE profilePS5103222.35268133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2868134IPR001471AP2/ERF domain
PRINTSPR003679.0E-96980IPR001471AP2/ERF domain
PRINTSPR003679.0E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDFYVNRKVK RRRNGSDSIE EILLRWRNLN QEVNSNNEQV KKKRKSPGNG SNKGCMPGKG  60
GPENSGCKYR GVRQRTWGKW VAEIREPVYI SGQYKSKGKR LWLGTYSTAG DAAVAYDEAA  120
KVMYGSNAIL NFPNSCDSSS NGNITRTSSG QSSIDHEELV VDDEKKTEIE SDLKDDDGDG  180
GVVVNMDLSY DYANHGSPAC SWTEEELEVI TEENSEMELT NLECDSRFFP KSQKSCVEVE  240
RPIMEEEIDE DELVHNNVSN TIDVEPTVMF SKDDFSRLDE ICNSNDQIVL QDMDFRSCEN  300
LNEDVSTRLE YMEHFLMDDN CSMEAANISD IICLTENHDE AFDFQRFLEE SFDFKPMAEL  360
NYAKNEEQFD CTYAYNQQID LQNSDTNSEI RSDGIRKEKN LHGFRLDDFG ASNSWQPEEN  420
IEDLSMCSFD FDISSYINDI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1966138368ATERF1
3gcc_A4e-1966138368ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512NRKVKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768082.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLM1BAV20.0M1BAV2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-34ERF family protein