PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g027510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 908aa    MW: 100176 Da    PI: 6.7324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g027510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18322422199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Sopen10g027510.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 412
                       99**************************555567778***************9989999999***9.********************876.88 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                       ++l+++++++
  Sopen10g027510.1 413 GKLLMGFRKA 422
                       8888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-29314423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100173.14E-22320421No hitNo description
SMARTSM010191.9E-20322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PfamPF023626.8E-16322422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.202586636IPR011124Zinc finger, CW-type
PfamPF074967.0E-12591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MESKICMNGL CGTASSIEWK KGWPLRSGEF ATLCDKCGNA YEQLLFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCIS CVRSCQQHAT PNHEKPKAFG TSISNSVGET  120
ASTSLGSQIN GSEPNKRDGS DSIDPALLLL HQNDNTNSPI GQIKMEETFH PAGESGSTFS  180
SNLCQASAES SKNAKLDSYN GYKGVVEIHG STVQTNLSIA LSAPSPNSKL FPTTLDEGDL  240
NKTISSLQQG SRSRNLLPKP PKSASALGPE MNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVKITQE NRLSAIPKSV FSAEPTSFSA MPENLPLMSG YSGLLQSFKG SREPSVNLSS  480
KHFNGGDFSW YLTEKNGGRN ADGAFSPSMP VSERKRSRNI GSKSKRLLID AHEALELKLS  540
WEELQDMLRP PLSVQPTTVT IEDQEFEEYE QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK  600
WRKLPADYLL PPQWTCQDNI SDHSRSSCSV PDDLTPRELE TLLKMDKDFK KQRSASGLRI  660
TQAHDSSDLD SQANGISIAG DPREPGPASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA ELGQMNQLMW SSREETEVDS FSRQVKPEVD  780
PSDKERSGSE TLARGHSSNQ LQKLPEISKS QLDLNCHPNR EDTGSSHISM MSLLQQACLP  840
LETYLRQNGL TSLVSEQQGS SGSQGLPQDT RESDLRVQED LCLASTAQEQ EMDVPKENSE  900
PDQSGKDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-673004231124B3 domain-containing transcription repressor VAL1
5yzz_C1e-673004231124B3 domain-containing transcription repressor VAL1
5z00_C1e-673004231124B3 domain-containing transcription repressor VAL1
5z00_G1e-673004231124B3 domain-containing transcription repressor VAL1
5z00_K1e-673004231124B3 domain-containing transcription repressor VAL1
5z00_M1e-673004231124B3 domain-containing transcription repressor VAL1
6j9a_A1e-673004232125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741KRRFKTLMMRKK
2730743KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055848.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G2YL690.0A0A2G2YL69_CAPAN; Uncharacterized protein
STRINGSolyc10g075030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]