PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g022760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 853aa MW: 94851.6 Da PI: 9.7714 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54 | 5.5e-17 | 10 | 126 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 G+rF+P de+l+ +yL k v +k+ + + i+ ++y + + w+L + +++ yfF+k +k+ +r +r + g Wk + k k+v Sopen10g022760.1 10 LGVRFRPIDEQLI-RYLIKFVVSKNYVC-KDIEFEELYGSkKAWELL---EDSSDTKYFFTKLKKRD---TRFSRtLVGGGSWKGKSKGKPVG 94 69***********.99****99999888.55888888876478***6...3455678****998865...68888667899***********8 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g+k+t + ++++++ + +W+m+ey+l Sopen10g022760.1 95 A---NKAGTKRTYNYEENKKNEVNDVSWIMKEYSL 126 8...679**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-15 | 5 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.503 | 8 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-12 | 11 | 126 | IPR003441 | NAC domain |
Pfam | PF14223 | 1.3E-32 | 379 | 517 | No hit | No description |
SuperFamily | SSF57756 | 6.49E-7 | 539 | 574 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 9.3E-5 | 553 | 573 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 1.8E-4 | 557 | 573 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 0.0017 | 557 | 573 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.927 | 558 | 573 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MAIESPDAEL GVRFRPIDEQ LIRYLIKFVV SKNYVCKDIE FEELYGSKKA WELLEDSSDT 60 KYFFTKLKKR DTRFSRTLVG GGSWKGKSKG KPVGANKAGT KRTYNYEENK KNEVNDVSWI 120 MKEYSLDDKV IKLLSNRGVM KHKDVVLCYV RCKVKKSRNH MPTTTVSGND DDEDGDDTLL 180 PQGPNEFGYG DQFPQQIVKP MHYIESGYVG CDDENMNDMT TQPQWPMDDH QLSQLIVTFP 240 MVQGNGAAMN EGNMNGEFVF PEKLSTYQEE QVQNVEETAG RSSRRYRVGN LKQQPARRTA 300 QGANSRRPCA VRRAVPVAAA SRSLRSSRER PDQDGKFRIE KFDGTDFSWW KMQIEDLLVQ 360 KDLDVVLGDK QGKLSDAEWA VLDRKAMSVI RLSLTKNVAF NILKEKTAKG ILEALSNMYE 420 KPSAANKIFL IRELVNTKMK EGSSVTEHIN SLNSILARLL SVGIKFDDEV QALLLLSSLP 480 DSWSGTVTAV ASSVGPNGFT FEKIRDLVLG EDVRRRSSGE SSGDMLNVVR GRGNNRGSGS 540 RNRRRSQSKA RDGSGVTCWN CKEVGHFRNQ CQKDKQVNIA EDSVNEDLFI CCAESNVDSW 600 VMDSGASFHA THSSEALQNL VIGDFGKVRL ADDRALDVTG MGDMVLKTPV GFWTLKDVRV 660 VPSLTKSLIS VRQLDEQGHH VKFGNGQWKV VRGNLVMARG TKRGSLYIVG LPSEGVTVPV 720 QKKNKVRFTE SRGQKKVVFA RKKPRATGQI QDERARKGSG RPVRGVCGSG STGRASAKAP 780 RRQWVKRTSI PAVDTSPENF LLSMESVCSQ GVLGSGSSCL KWEPVGTEDE SRAVSAVTDV 840 LKLRGASTGL SVD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A484NHL5 | 0.0 | A0A484NHL5_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14213 | 4 | 8 |