PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g022060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 409aa    MW: 47074.2 Da    PI: 8.8881
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g022060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.12.7e-20205255455
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++Wt +LH++F++ +eqL G+ +  Pk+i+e+m+v+gLt+ +v+SHLQk R 
  Sopen10g022060.1 205 VKWTADLHAKFMKSLEQL-GEGRCYPKEIVEVMDVPGLTRMQVASHLQKCRF 255
                       79****************.9*****************************995 PP
2Response_reg29.44.1e-11141171105
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       v++vd e ++   +  ++++ +y +v ++++++ea+e+l + +  +D+i++ +  p+++ ++ll +  + +  +  ++v ++ +e +a++alk
  Sopen10g022060.1  14 VVLVDPETKNVTKMVDLMKSCDY-KVITVRTSSEAMEMLSKGEekVDVIIISVHTPNLNSFKLLDQAVTLD--IISLFVCDEYNELLAKKALK 103
                       689999*****************.9**************665556*******************9998877..777777788889******** PP

                       TTESEEEESS--HH CS
      Response_reg  92 aGakdflsKpfdpe 105
                        Ga+ f+  p ++e
  Sopen10g022060.1 104 EGASLFVHRPLNEE 117
                       **********7654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-1311136No hitNo description
SuperFamilySSF521722.28E-1311133IPR011006CheY-like superfamily
PROSITE profilePS5011020.04513127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-514117IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466894.12E-14200255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-19201256IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-17202255IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MATGYYGIVD EVRVVLVDPE TKNVTKMVDL MKSCDYKVIT VRTSSEAMEM LSKGEEKVDV  60
IIISVHTPNL NSFKLLDQAV TLDIISLFVC DEYNELLAKK ALKEGASLFV HRPLNEEIVK  120
YLWQFVLRRK IERETAKKGS EDGDKMIVND VDTNDMDGDN EVLSKETNYE EVEDDIGSNG  180
KYKRRRKNNR KDIKKNKVIK QKNCVKWTAD LHAKFMKSLE QLGEGRCYPK EIVEVMDVPG  240
LTRMQVASHL QKCRFNNWRS PEERKSNWRL SDQESSSESQ QKSSNRKYGS MPRFQNNIPN  300
QIQKGPEFPF STPNTSRGES SIQEKLYPSQ CQVQPHYPNI DNSLNNPFLF VQNNVGGVLQ  360
QHQHRPVLEM FGSQRPRNPI IGNITHRPGS AFNSWNHHIQ RNTNTYSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767938.10.0two-component response regulator ORR21-like
TrEMBLM1E1C80.0M1E1C8_SOLTU; Uncharacterized protein
STRINGSolyc10g050420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-26response regulator 2