PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g020570.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 522aa    MW: 59294.7 Da    PI: 5.8376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g020570.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66.1e-103684461497
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        r  +p++f+ ehg +   +  + le ++g  W+vkl   ++sg+++l +GW++F +   +    f++F + +  +f+l v +f
  Sopen10g020570.1 368 LRKHIPNEFVIEHGAN--LGDIVLLEVPNGVAWKVKL--LNSSGMVWLNEGWNKFKEYYSIACCYFLLFIRYK-GSFQLSVFIF 446
                       3458*********977..776888999**********..****************998888877777777333.5666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.04E-9351447No hitNo description
Gene3DG3DSA:2.40.330.102.4E-12365449IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-7368446IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-14369456IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.333372449IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MLDFGHSDLL KVAGSLYGQK GGVLTLNKPF LVFTFISLID QRRFVLSVHG ITPWNQSLMF  60
VPGIKPWNQS LVLTPITALS RTLNEYKALC HGLPFMHRER HGSFAMFRVL FIYAGEPVST  120
RFWCGDFRFW FVVKKWKIWR SDVKGLKQRN GVGSEGSDCS SMNNDAYTVV VAAVVRAPRN  180
DFKAVREEWA AIRIQTTFHG FFVFPLDFLF FPFYWAHPSH DKFINKKIDM FEEMSLVCGN  240
DRARGDCAKS FEDIGLDCSS EKGNEDEIEG QSKENGVQDV SETSQVKSSR KRNRPSDVQD  300
VVGDISTKLG EVAAAISKIA DSRLDVTRLY EEVMAIEGYG EEFLGDAFDY LVQSDTLAKG  360
FMAKNQNLRK HIPNEFVIEH GANLGDIVLL EVPNGVAWKV KLLNSSGMVW LNEGWNKFKE  420
YYSIACCYFL LFIRYKGSFQ LSVFIFDLNA SEIEYPPGQN EDMTPQNRSV LCVPPEESGK  480
NLPLLGEPPN ENRINLTPPD DPPEEDVIYY LHLVFTPSWP KV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein