PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g018050.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 336aa    MW: 35727.5 Da    PI: 6.3502
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g018050.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16238273134
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++Cgt++  Tp++Rrgp g+++LCnaCGl ++ k 
  Sopen10g018050.2 238 CRHCGTSSksTPMMRRGPAGPRSLCNACGLTWANKS 273
                       ********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.127102137IPR010399Tify domain
SMARTSM009792.6E-10102137IPR010399Tify domain
PfamPF062005.1E-11106136IPR010399Tify domain
PROSITE profilePS5101713.245169211IPR010402CCT domain
PfamPF062033.7E-16169211IPR010402CCT domain
SMARTSM004019.3E-6232285IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-9233272No hitNo description
Gene3DG3DSA:3.30.50.103.1E-12237272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-10238272No hitNo description
PfamPF003201.1E-14238274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTGIRDTMYR RETMTAAVQR EGQQQTHFAD DGDDDDVDVA GGGGGGGMES IEDSSHHIGY  60
DHNHHGLHNG TDGTIATTAA ALNGVEGVPH NSLYVPGSEM VGGGSSDQLT LSFRGEVFVY  120
DAVSPEKVQA VLLLLGGYEV PAGIPTVNMA SQSHRASSEG PGRLNQPQRA ASLSRFREKR  180
KERCFDKKIR YTVRKEVALR MQRKKGQFTS SKTVSDEAAS SSAEGNAGSS QEEQETLCRH  240
CGTSSKSTPM MRRGPAGPRS LCNACGLTWA NKSLRNACGL TWANKGILRD LSKVSTTGAQ  300
ELSVKSSEQN GEADGSDVMA AAGIITSDDE NMVLSV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612270.0GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088797.10.0GATA transcription factor 24-like
SwissprotQ8H1G05e-76GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A3Q7IG230.0A0A3Q7IG23_SOLLC; Uncharacterized protein
STRINGSolyc10g047640.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-73ZIM-like 1