PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g016990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 329aa    MW: 35151.9 Da    PI: 8.5693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g016990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09162187227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       k e Cr +  +GtC++G++C+F Hg+
  Sopen10g016990.1 162 KSETCRWWEDSGTCRFGSKCRFVHGK 187
                       6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.0E-13158192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8159191IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427160188IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6162187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQASNVHSFD GNVSPINAQN FIGRGRFYPG SKTTILDPYS SSDSSGSSSN KVSPLARYLC  60
PSSPVPFISD SPKHRSLVST SSGSRSGSGG GVPRSPLASV ENFQIPLMFR TPVKVEEDVV  120
VMDGILVEAK HGPRANKLSP STSDSGGRLS SSTPANDNSF HKSETCRWWE DSGTCRFGSK  180
CRFVHGKEDL RSTAFANRNQ SEALLCRSYT SGPSSYGPRG RSVHQQVHSA ASPAKAAKMS  240
TPTTTSTTTL KVFTKDKDPS SSDSSTSSTP TSNISSTDWC PLDDNIEVTL PSSGEKCASR  300
EDVNAHIQTV LYGPSGRKRL LACIDLVEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089576.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_015089577.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_027767893.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_027767894.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_027767895.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_027767896.10.0mRNA decay activator protein ZFP36L2-like
RefseqXP_027767897.10.0mRNA decay activator protein ZFP36L2-like
TrEMBLA0A0V0IC541e-176A0A0V0IC54_SOLCH; Putative zinc finger protein 36, C3H1 type-like 1-like
STRINGSolyc10g047040.1.10.0(Solanum lycopersicum)