PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g008180.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 368aa    MW: 40917.6 Da    PI: 4.775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g008180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-15223270355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++hn+ Er+RRd+iN+++ +L++l+P++      K +  ++L +++eY+k+Lq
  Sopen10g008180.1 223 ATHNQSERKRRDKINQRMKTLQKLVPTS-----SKTDTTSMLDEVIEYLKQLQ 270
                       58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.02E-16217274No hitNo description
PROSITE profilePS5088816.729220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12223270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18223292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17224279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDYEVAELKW EKGEVVMHGL GPPRVPCYYN PLSTPSPTKY TWDDKPHAAA GGTLESVVNQ  60
ATNYNIDIRD EGDFVSWFDD CLPETDIDIV AVVPTSCTNY NQQVPPSTRV ASCSGDAEMA  120
RVGTGSSFEE ISEDFENEEA NLIGSMVYEG QNNNMVDQTV SPGETSLGEE RVLTTTSTFK  180
HNKSKTPNNH DSRGQESRDN EDEDEKKRSN ISSFSTKRCR VAATHNQSER KRRDKINQRM  240
KTLQKLVPTS SKTDTTSMLD EVIEYLKQLQ AQVKAMSMMI HVNMQPPPMM LPNMAFQQQQ  300
QQFQMSMMGM ARPIDVNALS SPNITTIPSI LHTTAPSNFN DPPIASPGAD PSASLVAARQ  360
LSQVQQQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERKRRD
2229234RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089279.10.0transcription factor UNE10-like
TrEMBLA0A3Q7ID060.0A0A3Q7ID06_SOLLC; Uncharacterized protein
STRINGSolyc10g018510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-58bHLH family protein