PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g006210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19905.8 Da PI: 5.7161 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.5 | 1.4e-07 | 28 | 51 | 18 | 41 |
HHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 18 ngilKKAeELSvLCdaevaviifs 41 + ++K A+ L +LC++ +a++ifs Sopen10g006210.1 28 KSLFKRANDLAILCGIHIAILIFS 51 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.24E-10 | 25 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.194 | 27 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-7 | 28 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MESKNSNVDL ALAKEKRVEG AKIFQMQKSL FKRANDLAIL CGIHIAILIF SVGRQPIFFG 60 TPDEETVVQK FMEANHPTAP RFYMKMKKNE EENKEKGKSV EDNITHRQLE DFESPYLGSL 120 LKLYQGITEF EDLLNKEIDP TQLNQEIEKH VDPKIVSKMN VASSSYLPTD MLSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169511.1 | 6e-75 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | K4CYL5 | 7e-90 | K4CYL5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g012380.1.1 | 1e-90 | (Solanum lycopersicum) | ||||
STRING | Solyc10g012390.1.1 | 1e-90 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-09 | AGAMOUS-like 62 |