PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g005700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 317aa MW: 35049.5 Da PI: 4.8623 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 146 | 204 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+ eHnh+ Sopen10g005700.1 146 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 204 79************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-31 | 135 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.175 | 140 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-26 | 143 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 145 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-26 | 147 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEEDWDLNAV VRSCTATTTA ASSSGSSAIS FTNFQPRTTD DDNNSNNNSV FCFEDLVLKQ 60 SLLLNKNKIT DDFEELHQLC KPFITQQSEQ ITVISSQSPS QQLTDTKSIQ PNRALSCTSH 120 AQSPTIKRRK NQLKKVCQVA ADGLSSDMWS WRKYGQKPIK GSPYPRGYYK CSTSKGCLAR 180 KQVERNRSDP NMFIVTYTAE HNHPMPTHRN SLAGISRQKT AKPTGSSPVS SPVTNSPAPE 240 NQESSRDDKE DIFEDDDDEF GVSDVGLDKM EPEDDFFDGL DELEIPATGD NSPANFPATF 300 QFPWLANNAA TTAAGGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-22 | 130 | 207 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-22 | 130 | 207 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089611.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A3Q7J7M9 | 0.0 | A0A3Q7J7M9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g011910.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-57 | WRKY family protein |