PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g005700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 317aa    MW: 35049.5 Da    PI: 4.8623
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g005700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31146204259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Sopen10g005700.1 146 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 204
                       79************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-31135206IPR003657WRKY domain
PROSITE profilePS5081135.175140206IPR003657WRKY domain
SuperFamilySSF1182901.31E-26143206IPR003657WRKY domain
SMARTSM007741.0E-36145205IPR003657WRKY domain
PfamPF031066.2E-26147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEDWDLNAV VRSCTATTTA ASSSGSSAIS FTNFQPRTTD DDNNSNNNSV FCFEDLVLKQ  60
SLLLNKNKIT DDFEELHQLC KPFITQQSEQ ITVISSQSPS QQLTDTKSIQ PNRALSCTSH  120
AQSPTIKRRK NQLKKVCQVA ADGLSSDMWS WRKYGQKPIK GSPYPRGYYK CSTSKGCLAR  180
KQVERNRSDP NMFIVTYTAE HNHPMPTHRN SLAGISRQKT AKPTGSSPVS SPVTNSPAPE  240
NQESSRDDKE DIFEDDDDEF GVSDVGLDKM EPEDDFFDGL DELEIPATGD NSPANFPATF  300
QFPWLANNAA TTAAGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-22130207280Disease resistance protein RRS1
5w3x_D4e-22130207280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089611.10.0WRKY transcription factor 22-like
TrEMBLA0A3Q7J7M90.0A0A3Q7J7M9_SOLLC; Uncharacterized protein
STRINGSolyc10g011910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-57WRKY family protein