PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g004900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24324.5 Da PI: 9.2584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+++++g Sopen10g004900.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRG 75 6********.**********8...557************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.9E-40 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 26 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.66E-33 | 26 | 83 | No hit | No description |
Pfam | PF00847 | 6.6E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.039 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAPKEKIGAV TAMAMVNLNG ISKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE 60 EAARAYDNAA REFRGVKAKT NFPQLEKEKE EDLKFAVKNE INRSPSQTST VESSSPVMVD 120 SSSPLDLSLC GSIGGFNHHT VKFPSSGGGF TGSVPAVNHM YYIEALARAG VINLETNRKK 180 TVDYLGGGGY SDSSTVIDFM RVDVKSTTAG LNLDLNFPPP ENM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 22 | 83 | 1 | 63 | ATERF1 |
3gcc_A | 1e-21 | 22 | 83 | 1 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089534.1 | 1e-166 | ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_015089545.1 | 1e-166 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3Q7ICU7 | 1e-156 | A0A3Q7ICU7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g009110.1.1 | 1e-157 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-27 | erf domain protein 9 |