PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g004860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 135aa MW: 15710.4 Da PI: 7.8459 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137.1 | 5.4e-43 | 51 | 127 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C+ad+ +ak+yhrrhkvCe+h+kap+vl++gl+qrfCqqCsrfh+l efD++k+sCrrrLa+hnerrrk+++ Sopen10g004860.1 51 CQVEECTADMVNAKTYHRRHKVCEFHAKAPAVLIDGLRQRFCQQCSRFHQLAEFDDAKKSCRRRLAGHNERRRKSAQ 127 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF037575 | 9.8E-58 | 1 | 135 | IPR017238 | Squamosa promoter-binding protein |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-34 | 44 | 112 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.282 | 48 | 125 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-39 | 49 | 128 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-33 | 51 | 124 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MENNKWEGKR NMEEEDDEED EDVVEDTKRK RVLTHSGRKV STAEGSRQPS CQVEECTADM 60 VNAKTYHRRH KVCEFHAKAP AVLIDGLRQR FCQQCSRFHQ LAEFDDAKKS CRRRLAGHNE 120 RRRKSAQDYP GEGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-37 | 51 | 124 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00290 | DAP | Transfer from AT2G33810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-161 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015056436.1 | 4e-97 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 2e-55 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A3Q7IBL6 | 7e-81 | A0A3Q7IBL6_SOLLC; Squamosa promoter-binding-like protein | ||||
STRING | Solyc10g009080.2.1 | 1e-81 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 4e-43 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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