PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g004550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 404aa    MW: 46261.2 Da    PI: 9.7428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g004550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.79.1e-261022301120
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ 65 
                       a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l +                             
  Sopen10g004550.1 102 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKApfqvfsnkidstnkalnvrnvanevgqf 194
                       589**************************************************************8888877666555555554444444444 PP

               TCP  66 ...............................ssssaseceaesssssasnsssgkaaksaakskksqksaasalnlakesrakara 120
                                                      +                                                  ++ +
  Sopen10g004550.1 195 aleqswsadkkteleelarhssklnatvqysT--------------------------------------------------DQFS 230
                       44444433333333333333333322222220..................................................2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-25103240IPR005333Transcription factor, TCP
PROSITE profilePS5136927.683105163IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MKHHLEVSNE NEDKSSSSSQ QDDDDDENKD EFFQEILQSD YQHLQQWPNY FTPPSSTLVP  60
KHQNNTQCPS HKEETKKVSL KRKPKRAKQD VMEVHGSRIV RATGRKDRHS KVSTATGPKD  120
RRVRLSPNTA IQFYDVQDRL GYDRPSKAID WLIKEAQRAI NALEKAPFQV FSNKIDSTNK  180
ALNVRNVANE VGQFALEQSW SADKKTELEE LARHSSKLNA TVQYSTDQFS EGCYKEQSSK  240
VCQANATQIV NSSANGSKIQ SFCQIQTHPQ AHFHSQTKRQ SPNDAKIQSF CEYQTHPQSH  300
FHSQTKKQSP NVAKTLSFCE LQNPPQGHFH SQTKNQPTND AKIQSFCELQ THPQSHFQSE  360
TKNRSPNVAK IQSFYSPTKP FSVRNQKPIN SIRQLFQFSI MSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-17110163154Putative transcription factor PCF6
5zkt_B3e-17110163154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771449.19e-85PREDICTED: transcription factor TCP3-like, partial
TrEMBLA0A3Q7ICJ60.0A0A3Q7ICJ6_SOLLC; Uncharacterized protein
STRINGSolyc10g008780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.19e-35TCP domain protein 10