PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g003840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 259aa MW: 29084.8 Da PI: 6.7086 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.3e-29 | 92 | 149 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D +WrKYGqK++kgs++pr+YYrC+s+ gCp+kk+ver+++dp+v++itY+++Hnh+ Sopen10g003840.1 92 DSSTWRKYGQKPIKGSPYPRGYYRCSSSkGCPAKKQVERCHHDPNVLIITYSSDHNHP 149 6779**********************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-31 | 84 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-26 | 86 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-33 | 90 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 92 | 149 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.09 | 92 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEGVLQKDPY LHKQEESFQR HSIKLKRYKK DPIAENSGEG SVSDDDETTE VNMPLPRKLS 60 KKGAKKRVIS VPIKDCDISR SNYKGEIYPP FDSSTWRKYG QKPIKGSPYP RGYYRCSSSK 120 GCPAKKQVER CHHDPNVLII TYSSDHNHPL PAAATKHRHP TTTFAATNTE QSTIFTDQPE 180 NDFIMAEVGA GELLGCFSYV GPTLLECTSP TMVGSTWVDD DVAFMLPIGE EDQSLFGDLG 240 ELPECSMVFR RYNRIVDGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 92 | 151 | 16 | 74 | WRKY transcription factor 1 |
5w3x_B | 4e-19 | 66 | 151 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 4e-19 | 66 | 151 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055315.1 | 0.0 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A3Q7IB32 | 1e-145 | A0A3Q7IB32_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g007970.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7468 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-56 | WRKY DNA-binding protein 65 |