PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g002990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 628aa    MW: 69858.2 Da    PI: 7.8862
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g002990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.77e-172174457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      + ++t+eq+++Le+ F +++++  +++ +LAk+l +  rq+ +W+qNrRa++k+
  Sopen10g002990.1 21 KKRLTQEQVKRLEASFDSTKKLELDQKLQLAKELCVHPRQIAIWYQNRRARWKN 74
                      5679************************************************95 PP
2HD-ZIP_I/II96.23.3e-3120111293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +k+rl++eqvk LE sF++++kLe ++K +la+eL ++prq+a+W+qnrRAR+k++ lE dy++L+ ++d+  +e++++eke+e+L+ elk+
  Sopen10g002990.1  20 NKKRLTQEQVKRLEASFDSTKKLELDQKLQLAKELCVHPRQIAIWYQNRRARWKNQSLELDYTTLQLKLDTTLAEKKQIEKENERLKIELKK 111
                       79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7711575IPR001356Homeobox domain
SMARTSM003891.2E-111879IPR001356Homeobox domain
SuperFamilySSF466893.76E-151876IPR009057Homeodomain-like
CDDcd000867.98E-142176No hitNo description
PfamPF000463.6E-142174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-162281IPR009057Homeodomain-like
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
CDDcd131321.29E-155179616No hitNo description
TIGRFAMsTIGR007971.4E-70189588IPR002528Multi antimicrobial extrusion protein
PfamPF015548.6E-35189348IPR002528Multi antimicrobial extrusion protein
PfamPF015545.5E-27412574IPR002528Multi antimicrobial extrusion protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MNNFLHSQYL HKHQSILNHN KKRLTQEQVK RLEASFDSTK KLELDQKLQL AKELCVHPRQ  60
IAIWYQNRRA RWKNQSLELD YTTLQLKLDT TLAEKKQIEK ENERLKIELK KVNEMLIAIK  120
QANIQDELAQ GIFPCSISSA MDDNSISNSL KSPMLLSQTS LDTNKWWIIV INKLIDVEEA  180
KNQILFSLPM IVVTSCFYFI NLVSVMFAGH LGQLELAASN LANSWAVVTG LAFMIGLSGA  240
LETLCGQGYG AKMYRMLGIH LQTSCIMSFL FSTVIAIIWW NSDTILILLH QDPDIAKKAG  300
EFLKLLIPGL LAYGFLQNIL RFFQAQSIVL PLVVCSVGCL VIHIGIAYGL VHWTSLGFNG  360
APLAASISIW ISVLTLSVYV LFSERFSHVW RDGGFSFEPF HYVLVNLKLA LPSAAMVCLE  420
YWAFELLVLL AGLMPNSETT TSLIAMSVNT EAIAYTISYG LSAAASTRVA NELGGGNIDK  480
AKHAMVVTLK LSIILALIVD LVLFFGHNVW AGLFSDSTEI INKFATMTPL LLISFVFDFF  540
QGVLSGVARG CGWQHLAMCI NLATFYFIGM PIAALLAFKF NLHAQGLWMG LICGLACQGL  600
GLLLLTLFIK WEKVVASTKS NGENELLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y50_A1e-1041776138442Protein DETOXIFICATION 14
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for protection of the roots from inhibitory compounds. When expressed in a heterologous system, confers resistance to tetramethylammonium chloride. {ECO:0000269|PubMed:11449055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089236.10.0protein DETOXIFICATION 18-like
SwissprotQ9LUH20.0DTX19_ARATH; Protein DETOXIFICATION 19
TrEMBLA0A3Q7IAI60.0A0A3Q7IAI6_SOLLC; Protein DETOXIFICATION
STRINGSolyc10g007100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA219722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.16e-26homeobox protein 52
Publications ? help Back to Top
  1. Diener AC,Gaxiola RA,Fink GR
    Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.
    Plant Cell, 2001. 13(7): p. 1625-38
    [PMID:11449055]
  2. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  3. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  4. Marinova K, et al.
    The Arabidopsis MATE transporter TT12 acts as a vacuolar flavonoid/H+ -antiporter active in proanthocyanidin-accumulating cells of the seed coat.
    Plant Cell, 2007. 19(6): p. 2023-38
    [PMID:17601828]