PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g002570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 386aa MW: 42397.5 Da PI: 6.5121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.3e-06 | 276 | 314 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Sopen10g002570.1 276 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 314 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.001 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.11E-11 | 275 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-9 | 275 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-6 | 275 | 318 | No hit | No description |
SMART | SM00353 | 0.008 | 276 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAEEFQLGGG NWWENNTSTS SRNRFDSSGS SITPTTSTSA TTTDYSSNWP IQTNHVDIKP 60 RTFLDSVSVS QSSDHDDKGE GGGGGGGGVL SSHDSNFQIM GLGLTSQPHD WNHQSLLNYE 120 DSSSQMNIRG FSLDQNNSIF SHSSNYEVTD NHQVLHSSTT NSWSKFPQFL RASPSPEQPP 180 LPPPARPLPP PHSQLHFSNN TPFWNASAAS MNDVPSSLFP SNLHNIPNNT TIDEKAKNMG 240 DVRDINRIIS KKTTTTETSN KRPRNETSTP SPTIKVRKEK MGDRITALQQ LVSPFGKTDT 300 ASVLSEAIEY IKFLHDQIGA LSAPYMKSGA SMQHLQSDNK SEDIGEGRSK DLRSRGLCLV 360 PISSIFPVTH ETNVDLWTPT FGSTFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055860.1 | 0.0 | transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 1e-61 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A3Q7IAA0 | 0.0 | A0A3Q7IAA0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g006640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-64 | bHLH family protein |
Publications ? help Back to Top | |||
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