PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g001650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 737aa    MW: 79575.1 Da    PI: 5.0039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g001650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-24293351160
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       ++Dg+nW KYG  +vkgse+pr++Y+Ct+++C vkk++ r + +++v+e++Y+g Hnh+k
  Sopen10g001650.1 293 VEDGHNWIKYGENQVKGSEYPRGFYKCTHPNCLVKKEIARYH-QGHVTEVIYNGAHNHPK 351
                       58***************************************9.9**************85 PP
2WRKY96.91.3e-30543600259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vkg+++prsYY+Ct +gC+v+k+vers  d+  v++ Y g+Hnh+
  Sopen10g001650.1 543 EDGYRWRKYGQKLVKGNPNPRSYYKCTNSGCSVRKHVERSPFDQMSVITSYDGKHNHD 600
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.797288352IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-20289352IPR003657WRKY domain
SuperFamilySSF1182901.57E-19292352IPR003657WRKY domain
SMARTSM007747.0E-22293351IPR003657WRKY domain
PfamPF031064.7E-19294350IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-32527602IPR003657WRKY domain
SuperFamilySSF1182901.96E-26534602IPR003657WRKY domain
PROSITE profilePS5081135.037537602IPR003657WRKY domain
SMARTSM007743.9E-34542601IPR003657WRKY domain
PfamPF031061.4E-23543600IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MSGFNDLVPN GDWLPASPSP SPSSIALISS LRADDFGWPA HLEEANESTC KNLVVEPQEH  60
VNWSNSVGND GAQTGAMTNQ TVNVSAPSKQ NTSSRGGLME RMAARTGFNV SRLNTDGLRP  120
SFVSQNQEIK SPYLSIAAGL SPSILLYSPV MLYNSLVYPS PPTGLLPCAS GNESRSAMLT  180
TEAADKMNAT AFGTNSSSYL SSNPIMETGG VNEFQIEGSV DPNNSLPLHS MEATQNEQIC  240
NETTDIPMFT EEDVRGSDKN PEVRAFNAVG GSTEHPPSLE EQQNEDTAGD TSVEDGHNWI  300
KYGENQVKGS EYPRGFYKCT HPNCLVKKEI ARYHQGHVTE VIYNGAHNHP KPQPNQISAL  360
GSSSSFGDIY HQGHVTEVIY NGAHNHPKPQ PNQISTLGSS SSFGDIQLDN VDPTGTGVNS  420
DLALETVQQG PTAGGLKRKN DNIEAISFAA LHSEYCRGAA TLHSNDAQLG SADAVDIASI  480
FSTEGDDHGT RGSAPLDCDD GGDNPESKIR KIEADATDTS SVSRSMKQPR VVVQTISELD  540
VIEDGYRWRK YGQKLVKGNP NPRSYYKCTN SGCSVRKHVE RSPFDQMSVI TSYDGKHNHD  600
APEERSSIQV SSIASIYRSN PITTNAQDKV GRPEPKQLQK TSRRYGRGPP FGSTSGFNSS  660
ETNQQQGLTG PSMTGFNSDQ HQFSVPAYPY PGWAQPVNDA GFVLPEGEPM PNPNMNYSNA  720
SSTYQQTMNG LPPGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-31533602877Probable WRKY transcription factor 4
2lex_A5e-31533602877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352570.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A3Q7IAT70.0A0A3Q7IAT7_SOLLC; Uncharacterized protein
STRINGSolyc10g005680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.16e-92WRKY DNA-binding protein 2