PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g035810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 331aa    MW: 37385.7 Da    PI: 8.6502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g035810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.8e-10144191455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen09g035810.1 144 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 191
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.57E-10138195No hitNo description
SuperFamilySSF474591.44E-17138210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-7144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRGNLPPTQF TTDPGFAERA ARFSCFATNL ESNHSIKIQD VNLVQRNSEF GDSRENSSLS  60
EQIIGQNDTN SRKRKSISKG KSSKIVNDKN ESNAKRSKSE ENENKVTKKE ENAVLEENKD  120
NQKATEPPKD YIHVRARRGQ ATDAHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML  180
DEIINYVQSL QRQVEFLSMK LATVNPRMDF NMEALLSKDM FQSRGSLGHN MYQSETSTQA  240
FPYGFQSQPN QNYHKGTEFP FQINSLNPNL IRNSSMQLPP LDGFAEPTPQ VPTFFEDDLN  300
SVVQMGFGQN QNQSFPSVAG NVPNSQMKVE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-144HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085936.10.0transcription factor bHLH62
SwissprotQ9SRT25e-83BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A3Q7I8U40.0A0A3Q7I8U4_SOLLC; Uncharacterized protein
STRINGSolyc09g097870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]