PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen09g034850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29376.1 Da PI: 9.6882 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 90 | 138 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Sopen09g034850.1 90 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 138 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-31 | 88 | 148 | No hit | No description |
PROSITE profile | PS51032 | 22.418 | 89 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 89 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 89 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 89 | 147 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 90 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MSSSIGHESQ IHYQEVATTN PTNWLKMNQT ITNCTTTKGF SDYWLSTTKT QPMKFKGSSR 60 KSSLVHYEKS SSSSSSSSSS SMIASQGKLF RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD 120 TAEEAAFAYD TAAYMLRGDY AHLNFPHLKN QLKANSINGN ITSLLEAKIR AISTQSKKKA 180 NNISDRDEII ISPKGVSDDD ATIKNTIVQN QEKEINCEKL MEITKVKNIN NQENVDGVQL 240 SRMPSLDMDM IWDALLVSDL S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 85 | 156 | 1 | 68 | ATERF1 |
3gcc_A | 6e-22 | 85 | 156 | 1 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087507.1 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 4e-63 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | K4CWM1 | 1e-180 | K4CWM1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g091950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-51 | ERF family protein |