PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g033790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 121aa MW: 13638.7 Da PI: 6.5025 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 36.2 | 8.5e-12 | 43 | 101 | 2 | 60 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 elL + A+ v+++ + +a++lL+ ++ as +g+p+q+++ yf+ AL++r+ r+++++ Sopen09g033790.1 43 AELLQASAQLVATRTFDRARKLLSLCNQSASATGTPVQKIVYYFADALQHRIDREMTKM 101 5789999**********************************************955544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.9E-9 | 43 | 101 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MKITKQRSLN HISQKSDPYS IIFNPLAANS GLSPELLQDL DLAELLQASA QLVATRTFDR 60 ARKLLSLCNQ SASATGTPVQ KIVYYFADAL QHRIDREMTK MLFTGEEDIE VYFLFVYASC 120 C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160788.1 | 9e-70 | PREDICTED: scarecrow-like protein 28 | ||||
TrEMBL | A0A0V0H221 | 1e-70 | A0A0V0H221_SOLCH; Putative ovule protein (Fragment) | ||||
TrEMBL | M0ZMM4 | 8e-68 | M0ZMM4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003954 | 1e-68 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |