PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g029650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 176aa    MW: 20000.1 Da    PI: 8.9286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g029650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.7e-057382255
                      HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       Lr+l+P  +   ++K s ++    Av+YIk+Lq
  Sopen09g029650.1  7 SLRSLIPIEF--IKGKRSASDHMHAAVNYIKYLQ 38
                      7*******65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.613137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-4348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-6448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MANLVTSLRS LIPIEFIKGK RSASDHMHAA VNYIKYLQKN IQELDNTRKY IISLDNQNKS  60
STIIDTFQQN NNCVTVNKCE DGMEILINVN NSHKEEIFSL SKVLRWLLKQ GLNVVSCDNS  120
KKDERTLIKI QCQVSDISSG LTVVGLQKKL TDVINLKNVD SEFKFAIATW RIIELG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767704.11e-114transcription factor bHLH125-like
TrEMBLA0A3Q7I5D31e-86A0A3Q7I5D3_SOLLC; Uncharacterized protein
STRINGSolyc09g074810.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-23bHLH family protein