PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g028620.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 450aa    MW: 49544.3 Da    PI: 4.778
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g028620.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.9e-34250304155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r+rWtpeLHe+Fveav++LGGse+AtPk +l++mkv+gLt++hvkSHLQkYR+
  Sopen09g028620.2 250 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKMMKVEGLTIYHVKSHLQKYRT 304
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.736247307IPR017930Myb domain
SuperFamilySSF466895.2E-18248304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-31249306IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-25250304IPR006447Myb domain, plants
PfamPF002491.1E-10252303IPR001005SANT/Myb domain
PfamPF143797.5E-26336383IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEARPAVSVQ SVVASQLSNC GASGALSSSM SMFPTALGEK YPKFPDLQQA SMEKELKQHP  60
GTVVSSLPSN SGAVGLMFSS SSGFSADLQF SSVSPQEKHS GTAPFISQST YSETSIQLPH  120
SGVLQSTASS QYLNENHEPW CIDPLPNFLD YSMNNPVQNS QVASSNKQSD WQEWADLVLN  180
DEDALPSDWN DIIADTSIGD SELKMQFQEE KQPLNFPMQQ VQASQQIPPV PVETSVIAPV  240
SSPASSAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKMMKVEGL TIYHVKSHLQ  300
KYRTARYKPE ASEAGSSEKK QSSLDDLASL DLKTGIEITE ALRLQMEVQK RLHEQLEIQR  360
NLQLRIEEQG RYLQMMFEKQ CKSMPGADLA KGSSSSTADD AFAQLSQVDT AKEVDHEKQK  420
EREREVLGDP ETNITSTSDS PPLKRSKLDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088022.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_015088023.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_015088024.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_015088025.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_015088026.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_015088028.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
TrEMBLA0A3Q7I5300.0A0A3Q7I530_SOLLC; Uncharacterized protein
STRINGSolyc09g072830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-92phosphate starvation response 1