PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen09g028070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 22304 Da PI: 4.787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 65 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ +++g Sopen09g028070.1 65 NYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDNAEEAALAYDQAAFAMRG 115 59*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.80E-30 | 64 | 124 | No hit | No description |
Pfam | PF00847 | 2.3E-13 | 65 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 65 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 65 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 65 | 125 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-37 | 65 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MDYSSWDDLL FHYNSLPFNV NDTEDMLLFN LVAEGSSQET VNSSSSYGIK EEEVTSYEEE 60 RKDKNYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDNAE EAALAYDQAA FAMRGSMAIL 120 NFPVEIVKES LNEMKCRFDG NCSPVIELKK RYSMRRKSVS RKNRARKDVV VFEDLGAEYL 180 EELLISSESI TNW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 62 | 126 | 2 | 66 | ATERF1 |
3gcc_A | 4e-30 | 62 | 126 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 167 | RKNRARKD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087506.1 | 1e-141 | ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 1e-140 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1ANG6 | 1e-117 | M1ANG6_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g066360.1.1 | 1e-138 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-51 | ethylene response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|