PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g027970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 27437.1 Da PI: 5.9127 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a Sopen09g027970.1 7 PCGACKFLRRKCIKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVFNLQA 99 7*************************89***************************************************************** PP DUF260 93 elallkee 100 +la+lke+ Sopen09g027970.1 100 QLASLKEQ 107 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.347 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTGTGSPCGA CKFLRRKCIK GCVFAPYFCY EQGATHFSAI HKVFGASNVS KLLAHIPVSD 60 RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQAAA QNIQNGSNYI 120 TNPNYDKFQD VQSWFHHQSE NQNTMPQFDH SSLTSNNNIG SSIPYYDENN YNNNMTSNDH 180 SYHMGNNYEN INFVVPIKEN LSSFEEGGSC SVDSSFDNNK QWTFQDHDVV DDLQSVAFRY 240 LQHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087587.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9SLB6 | 3e-65 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A3Q7J0G3 | 0.0 | A0A3Q7J0G3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g066270.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-67 | LBD family protein |
Publications ? help Back to Top | |||
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