PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g027820.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 716aa    MW: 81777.6 Da    PI: 6.2156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g027820.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.4e-172677556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++++ eq+++Le++F+k+++p++++ ++L ++ gL+ +qVk+WFqN+R++ k
  Sopen09g027820.3 26 QRHSMEQIQRLEAFFKKCPHPDEDQQKQLGREAGLDHKQVKFWFQNKRTQTK 77
                      67899********************************************988 PP
2START112.27.6e-362374573206
                       HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       a + ++e vk+ + ++p+Wv ss        ++++ +kf+  +v        ++e ++++g+v m++ +l   +ld   +W + ++    +a+
  Sopen09g027820.3 237 AVASMNEMVKLWEMNDPFWVDSSsdrrCFIHREIYGRKFSN-QVlpyqtsmGRIESSKDFGIVSMTAIELIHNFLDPV-KWMNLFPtivtAAK 327
                       67899******************766533456667777744.55688889999************************9.99999999999*** PP

                       EEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE.-EESSEEEEEEEECTCEEEEEEEE CS
             START  81 tlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR.aellpSgiliepksnghskvtwve 168
                       t+ev++sg   g +qlm+ +l  lsplv  R+f+f+R++rql a +w+ vd+S d  ++   +s+v + + ++pSg++i++++ng skvtwve
  Sopen09g027820.3 328 TIEVLDSGtwgGSIQLMYEKLHILSPLVEaREFLFIRCCRQLDATTWIMVDISYDIFNEI--QSGVPCySWKFPSGCVIQDMGNGQSKVTWVE 418
                       ****************************99*********************888876664..4555442469********************* PP

                       -EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 169 hvdl.kgrlphwllrslvksglaegaktwvatlqrqcek 206
                       hv + +++++ +++r l+  + a gak+w  tlqr ce+
  Sopen09g027820.3 419 HVQVyEKYQVNSIFRDLLCDREAYGAKRWIVTLQRMCER 457
                       **97256778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-17773IPR009057Homeodomain-like
SuperFamilySSF466897.27E-16980IPR009057Homeodomain-like
PROSITE profilePS5007115.0131979IPR001356Homeobox domain
SMARTSM003893.7E-132183IPR001356Homeobox domain
CDDcd000861.52E-132680No hitNo description
PfamPF000469.4E-152677IPR001356Homeobox domain
PROSITE profilePS5084832.935226460IPR002913START domain
CDDcd088757.22E-77230456No hitNo description
SuperFamilySSF559618.79E-22233458No hitNo description
SMARTSM002344.7E-25235457IPR002913START domain
PfamPF018522.7E-29237457IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-5296421IPR023393START-like domain
SuperFamilySSF559611.65E-7479685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MTGSGEEPAG EPSNSQNRSE RHGQYQRHSM EQIQRLEAFF KKCPHPDEDQ QKQLGREAGL  60
DHKQVKFWFQ NKRTQTKTQN ERSINNALRK EKERFLCENK AMKEAMKNIM CPKCDGLPIG  120
KEERERNLEN MKTENQWLTQ QYEKVSNLIS HVVGRPFVMD SNLAPQKSTL RSTSNSSDGT  180
LLNQEICGSL IRYPPLRQEN NHNNNNVHTH SIMSPSPQEH DEYHHDSRQQ KILFETAVAS  240
MNEMVKLWEM NDPFWVDSSS DRRCFIHREI YGRKFSNQVL PYQTSMGRIE SSKDFGIVSM  300
TAIELIHNFL DPVKWMNLFP TIVTAAKTIE VLDSGTWGGS IQLMYEKLHI LSPLVEAREF  360
LFIRCCRQLD ATTWIMVDIS YDIFNEIQSG VPCYSWKFPS GCVIQDMGNG QSKVTWVEHV  420
QVYEKYQVNS IFRDLLCDRE AYGAKRWIVT LQRMCERCNF SMGSTYPTRH DFKGVFHDPE  480
GVKNTIQVSQ RMVKSFFEIL SMTDYDGDFP TSSQVNRVDR ISVRESEEII EPKGFIAIAT  540
ASLWLPLSFQ DVFNFFKDDK TRNQWDVLTG ENNVFELDRV PTGTFSGNNI TIIQPYNMHK  600
EMLVLEETSI DEMGAFLVYA PIEIRAITSI VNGVDATKVP ILPSGIIISP DGRLSSNSDG  660
TANAQNGSIL TVAFQILICG DNPTSKQQQF DVVASVHGVL GATILKIKEA LGCSDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087432.10.0homeobox-leucine zipper protein ROC8-like
TrEMBLA0A3Q7I5T00.0A0A3Q7I5T0_SOLLC; Uncharacterized protein
STRINGSolyc09g066030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-155homeodomain GLABROUS 8