PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g027780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 336aa    MW: 38015.2 Da    PI: 10.1014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g027780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31270327359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Sopen09g027780.1 270 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 327
                       9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18221266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33256328IPR003657WRKY domain
PROSITE profilePS5081129.884263329IPR003657WRKY domain
SuperFamilySSF1182903.92E-27266328IPR003657WRKY domain
SMARTSM007749.4E-39268328IPR003657WRKY domain
PfamPF031062.3E-27270327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVIS MLSQPHDEKI LARETGEAVH KFKKVVTLLN SNLGHARVRK  60
TKKILTPFPH SLLLENSSCK IVDDQLKPLQ LLPITYPENI RLEIGSNVNR IHPSLELNSH  120
SKNPLQLAQQ TSYHFAQQQQ QQRRYQLQQQ QMKQQADMMY RRSNSGISLN FDSSTCTPTM  180
SSTRSFISSL SIDGSVANLD GNAFHFIGAS RSADQSSYQH KKRCSGRGEE GSVKCGSSGR  240
CHCSKKRKHR VKRSIKVPAI SNKLADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSMRGC  300
PARKHVERCL EEPSMLIVTY EGEHNHPRLP SQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20261331776WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086317.10.0probable WRKY transcription factor 21
SwissprotO043361e-118WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3Q7J0C90.0A0A3Q7J0C9_SOLLC; Uncharacterized protein
STRINGSolyc09g066010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-100WRKY DNA-binding protein 39