PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g027420.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 469aa    MW: 51334.4 Da    PI: 8.6788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g027420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054466123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Sopen09g027420.1 44 FVCEICNKGFQRDQNLQLHRRGH 66
                      89*******************88 PP
2zf-C2H211.70.00083120142123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H +t+
  Sopen09g027420.1 120 WKCDKCSKIYAVQSDWKAHSKTC 142
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-54366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-64366No hitNo description
SMARTSM003550.0174466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9494466IPR007087Zinc finger, C2H2
PfamPF121717.4E-54466IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4108141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-6115140No hitNo description
SMARTSM00355180120140IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVLNHNHHEQ PPKIKKKRNL PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ  60
LHRRGHNLPW KLKQRTNKEN KKKAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW  120
KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSG  180
NSGLMNRAAA ASTIANSAAI ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV  240
TTHISLNPWD PQIPLNPNPT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHG  300
GSFAIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP  360
GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGVGG GGGQVLPPNG NVGNGLLLSY  420
GGNRMQDFQQ TLYERDNSVL KHHQLGFGFA GAGAGAGDGE STTGTWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35116182369Zinc finger protein JACKDAW
5b3h_F6e-35116182369Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086735.10.0zinc finger protein BALDIBIS
TrEMBLA0A3Q7I4C60.0A0A3Q7I4C6_SOLLC; Uncharacterized protein
STRINGSolyc09g065670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein