PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g027410.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 342aa MW: 39689.5 Da PI: 5.2344 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.3e-36 | 12 | 103 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+k++ e+ weF+++ F kg+k+ll Sopen09g027410.2 12 FLTKTYEMVDDSTTDHIVSWNRGGQSFVVWDPHFFSTTLLPKFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGSKHLL 95 9****************************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++ikr+k+ Sopen09g027410.2 96 RNIKRRKT 103 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.36E-35 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-38 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-58 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-31 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEGLHDIGPP PFLTKTYEMV DDSTTDHIVS WNRGGQSFVV WDPHFFSTTL LPKFFKHNNF 60 SSFVRQLNTY GFRKIDPERW EFANEAFLKG SKHLLRNIKR RKTPNSSQPL PSTEQGLGPC 120 VELGRFGFDG EVDRLRRDKQ VLMMELVKLR QNQQNTRAYL RSLEVRLQGT ERKQQQMMNF 180 LARAMQNPEF VQQLIQQKGK RREIEEDITK KRRRPIDHQG PSATLHVGGS SHSIKSEPLE 240 FGEANEFQVS ELEALALEMQ GYGRARKDQQ EEYTIEGLEQ FGNTDKELDV GFWEELFNDE 300 DVSGNEDGEE EDVDVLAESE FSSIQRRMKK AAIWIDQLLV DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-24 | 10 | 103 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 10 | 103 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 10 | 103 | 27 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 213 | KRREIEEDITKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027775382.1 | 0.0 | heat stress transcription factor A-6b isoform X2 | ||||
Refseq | XP_027775383.1 | 0.0 | heat stress transcription factor A-6b isoform X2 | ||||
Refseq | XP_027775384.1 | 0.0 | heat stress transcription factor A-6b isoform X2 | ||||
Swissprot | Q9LUH8 | 1e-117 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A3Q7I404 | 0.0 | A0A3Q7I404_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g065660.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-117 | heat shock transcription factor A6B |