PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g026820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 625aa    MW: 68410.7 Da    PI: 4.7381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g026820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14430476455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Sopen09g026820.1 430 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 476
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-367135IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.644426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18430487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-16430480No hitNo description
PfamPF000101.2E-11430475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-18430485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MEVTAEEASL HRSQQLRELY DSLSAGDSNP PARRPSAALS PEDLTESEWF YLMCVSFSFP  60
PPIGLPGKAY SKKHHIWIMG ANDVDSKVFC RAILAKSARI QTVVCIPLLD GVVELGTIEK  120
VQEDIGFIHR IKSFFNEPQQ AQPPKPALSE HSTSDPAAFS EPHFYFSNTP SSAGICPADQ  180
DGRIAGEEEN EDEDEDEDDE DENDEAELDS NGIAIQSGAG AANPIAAEAS ELMQLDMSEA  240
IRLGSPDDGS NNMDTDLYLD GISQAGNTAD SFKAETAISW GNFQDLQHLP GVPSYDELSQ  300
VDTHYSQTVS AVLEHLSNTS SKYASSATIM GSISPDSAQS AFTLWPITCS PNLSHCRRHD  360
IGDGSGTTSQ WLLKSILFTV PFLHSTKKLS EALSPKSRDA AAADSSAGAS RFRKGCTINS  420
STQQEETSGN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKKVQ  480
DLEARDRHEE TTKNADEKSG SPIVKAFPVK GKRRMKSTVE GSIVGAPAKM TGSPPMEEEV  540
LQVEVSIIEN DALVELRCPY KEGLLLDVMQ VLRELKVEVV AIQSSLSTGL LLAELRAKVK  600
ENIYGRKASI LEVKKSINQI IPRVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-13413669193Transcription factor MYC3
4rqw_B1e-13413669193Transcription factor MYC3
4rs9_A1e-13413669193Transcription factor MYC3
4yz6_A1e-13413669193Transcription factor MYC3
5gnj_A1e-14430479857Transcription factor MYC2
5gnj_B1e-14430479857Transcription factor MYC2
5gnj_E1e-14430479857Transcription factor MYC2
5gnj_F1e-14430479857Transcription factor MYC2
5gnj_G1e-14430479857Transcription factor MYC2
5gnj_I1e-14430479857Transcription factor MYC2
5gnj_M1e-14430479857Transcription factor MYC2
5gnj_N1e-14430479857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434439ERRRRE
2435440RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8486600.0JX848660.1 Solanum tuberosum basic helix loop helix (bHLH1) mRNA, complete cds.
GenBankKP3171730.0KP317173.1 Solanum tuberosum cultivar Hei Meiren bHLH1 (HLH1-1) mRNA, HLH1-1-purple allele, complete cds.
GenBankKP3171750.0KP317175.1 Solanum tuberosum cultivar Gannongshu NO.5 bHLH1 (HLH1-3) mRNA, HLH1-3-red allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086121.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3Q7I3M40.0A0A3Q7I3M4_SOLLC; Uncharacterized protein
STRINGSolyc09g065100.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-62bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]