PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g026630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 282aa    MW: 31384.1 Da    PI: 5.1789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g026630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-05158204455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +   +r RR +i ++++ L el P +   +++K   a+   + +++Ik+Lq
  Sopen09g026630.1 158 RAALSDRHRRMKIAERIDALGELFPCS--KQGGK---ASQMDEIIDHIKYLQ 204
                       556779********************7..25555...556679999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-5152206No hitNo description
Gene3DG3DSA:4.10.280.104.2E-8152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-9153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.922154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGEQNQPNSL GTQWAFLGST NDSYYLAGHE FNKQYMTEVG IDGIHYVPVP SPQWIHDQQT  60
PHNYVEYLAE NVVSEVDASV EASGFSLLEG SADMISQEIR YPRPYYEGVP PNCLNGSEHQ  120
RGALTLELRG NVRHASGPCS EASAAGSWYS SKSSRKARAA LSDRHRRMKI AERIDALGEL  180
FPCSKQGGKA SQMDEIIDHI KYLQFQMKDL SRSRLGGEPT SIPFVFLEGC GHYILDEQQN  240
EPLEDTMGKL LEVNPSLATQ LLESKGLFVM PMALAEGLHH HE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-163HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086205.10.0transcription factor bHLH69-like isoform X2
TrEMBLM0ZK860.0M0ZK86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000025120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-18LJRHL1-like 2