PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g021650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 261aa MW: 29732.8 Da PI: 7.1917 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.6 | 3.9e-27 | 95 | 185 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + k+++ r+ r++tr gCka++ vk +k++kw+vt++++eH+H+l+p Sopen09g021650.1 95 EFYDYYARRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHHGPPRKARTSTREGCKAMMLVKVNKSDKWVVTRFVKEHTHQLVP 185 6**********************************************9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.8E-25 | 95 | 185 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT 60 TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY ARRVGFIMRI DQCRRSEVDK 120 RILSRRLSCN KQGYYVKMKN HHGPPRKART STREGCKAMM LVKVNKSDKW VVTRFVKEHT 180 HQLVPSGCSS GNAMDKKDRR IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELLSKKI 240 QVAVNNVKEV EAEVQKQPNS K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027767634.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2-like isoform X1 | ||||
TrEMBL | A0A3Q7I1N9 | 0.0 | A0A3Q7I1N9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g057880.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-57 | FAR1 family protein |