PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g021630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27724.5 Da PI: 7.5044 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.7 | 1.4e-26 | 74 | 160 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl++eHnHel+ Sopen09g021630.1 74 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--NGKKKCRAIREGCKAMIIVKKEQSGKWLVAKLVKEHNHELV 160 8*****************************************9988..888888899******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-25 | 74 | 160 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAVDESNNHD DEMVQTSSPK EFTTNQDNAT DDVGIVETST EKEFTPNGLE VEGRSNMEPY 60 VGMEFESEEA AKAYYSTYAT HLGFIMRVDA FRRSMRNGEL VWRRLVCNKE GFSKSRQSQN 120 GKKKCRAIRE GCKAMIIVKK EQSGKWLVAK LVKEHNHELV VKPVNTPKGA ILCQTPDDKD 180 VKIRELTAEL QKERKRSAAL QEQLDMLLKD MEDHSDQLSK NINGIVKSVK ELESRKIVFP 240 NVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086379.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 isoform X5 | ||||
TrEMBL | A0A1S4D830 | 1e-139 | A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7YLL2 | 1e-139 | A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
STRING | XP_009802876.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-80 | FAR1 family protein |