PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g018670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 284aa    MW: 33189.4 Da    PI: 9.6712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g018670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-1765111148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd  l ++vkq+G ++W+ Ia+ m  gR +kqc++rw+++l
  Sopen09g018670.1  65 KGQWTEEEDRNLMKLVKQFGLKRWAQIAENMV-GRAGKQCRERWHNHL 111
                       799*****************************.*************97 PP

2Myb_DNA-binding521.6e-16117159145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +  W++eE+  lv+a+kq G++ W+ I ++++ gRt++ +k++w+
  Sopen09g018670.1 117 KETWSEEEEVMLVEAHKQIGNK-WAEIGKRIP-GRTENAIKNHWN 159
                       578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.96460115IPR017930Myb domain
SuperFamilySSF466898.8E-3064158IPR009057Homeodomain-like
SMARTSM007178.3E-1664113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2766118IPR009057Homeodomain-like
CDDcd001672.61E-1368111No hitNo description
PfamPF139212.0E-1868126No hitNo description
SMARTSM007175.4E-15116164IPR001005SANT/Myb domain
PROSITE profilePS5129420.481116166IPR017930Myb domain
CDDcd001671.34E-9119162No hitNo description
Gene3DG3DSA:1.10.10.605.8E-20119165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRKVMSYLKP LDGGYYDGTS GYNSNFPEQS LKNNVNIEEN GAQCWNNQEQ KKTGKKAKEV  60
TMLVKGQWTE EEDRNLMKLV KQFGLKRWAQ IAENMVGRAG KQCRERWHNH LRPDIKKETW  120
SEEEEVMLVE AHKQIGNKWA EIGKRIPGRT ENAIKNHWNA TKRRQISRRN KLKKEERYEY  180
SKGSVPRRAE EGTANVGTND NQVPPQENQV PPLEEVAMSD QVQAELAAYQ LKDEGKTGYV  240
QWRDNRALRG GLMTWESFKK SFFDRFFPIE LGEVKVEEFI NLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-45621661105C-Myb DNA-Binding Domain
1msf_C2e-45621661105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174RRNKLKKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-100HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767760.11e-118transcription factor MYB64-like
TrEMBLA0A3Q7I3A21e-119A0A3Q7I3A2_SOLLC; Uncharacterized protein
STRINGSolyc09g055650.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-56myb domain protein 98