PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g018670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 33189.4 Da PI: 9.6712 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++vkq+G ++W+ Ia+ m gR +kqc++rw+++l Sopen09g018670.1 65 KGQWTEEEDRNLMKLVKQFGLKRWAQIAENMV-GRAGKQCRERWHNHL 111 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 117 | 159 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ lv+a+kq G++ W+ I ++++ gRt++ +k++w+ Sopen09g018670.1 117 KETWSEEEEVMLVEAHKQIGNK-WAEIGKRIP-GRTENAIKNHWN 159 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.964 | 60 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-30 | 64 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-16 | 64 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-27 | 66 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.61E-13 | 68 | 111 | No hit | No description |
Pfam | PF13921 | 2.0E-18 | 68 | 126 | No hit | No description |
SMART | SM00717 | 5.4E-15 | 116 | 164 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.481 | 116 | 166 | IPR017930 | Myb domain |
CDD | cd00167 | 1.34E-9 | 119 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 119 | 165 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRKVMSYLKP LDGGYYDGTS GYNSNFPEQS LKNNVNIEEN GAQCWNNQEQ KKTGKKAKEV 60 TMLVKGQWTE EEDRNLMKLV KQFGLKRWAQ IAENMVGRAG KQCRERWHNH LRPDIKKETW 120 SEEEEVMLVE AHKQIGNKWA EIGKRIPGRT ENAIKNHWNA TKRRQISRRN KLKKEERYEY 180 SKGSVPRRAE EGTANVGTND NQVPPQENQV PPLEEVAMSD QVQAELAAYQ LKDEGKTGYV 240 QWRDNRALRG GLMTWESFKK SFFDRFFPIE LGEVKVEEFI NLHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-45 | 62 | 166 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 62 | 166 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 174 | RRNKLKKE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-100 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027767760.1 | 1e-118 | transcription factor MYB64-like | ||||
TrEMBL | A0A3Q7I3A2 | 1e-119 | A0A3Q7I3A2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g055650.1.1 | 1e-109 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-56 | myb domain protein 98 |