PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g010690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35011.1 Da PI: 8.2229 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 9e-08 | 105 | 147 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+R ++i fe+Lr l+P+ s K + +i kAv++I +L Sopen09g010690.1 105 TERKRTKKIGILFETLRALIPNI----SAKADECTIIDKAVNHILKL 147 6*********************6....69***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.858 | 97 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-13 | 100 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-10 | 101 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.02E-8 | 102 | 149 | No hit | No description |
SMART | SM00353 | 6.5E-4 | 103 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-5 | 105 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.61E-5 | 233 | 287 | No hit | No description |
CDD | cd04873 | 3.67E-4 | 237 | 279 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MNGGGESNHV FSWEIDDVLS YLNLNDNQIG SGTTFEGDMM KDPIRFDTYQ PLTVVNEVVE 60 SSTNVAKKRS PPNLKKNGKG IAEPKSSVDG VGDKGSLEHE IHIWTERKRT KKIGILFETL 120 RALIPNISAK ADECTIIDKA VNHILKLKNT FEKLKRENLE GLQEHNIRLM SSQKFPDVGN 180 SWENYFGDQG TTSNSSFIKP KTHGATPLMV NNNIPTSFMT WSSPDMILNV CGKDAHISVC 240 CPKKLGLFTF ICYVLGKHNI EIVSAKVSSD QSRTMFMIQA HAKGGIGIAK FSEAPTVEEI 300 YKQVAIKIMS FETPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228808.3 | 0.0 | transcription factor bHLH95-like | ||||
TrEMBL | A0A3Q7EBD9 | 0.0 | A0A3Q7EBD9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g014910.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-32 | bHLH family protein |