PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g008530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HB-other | ||||||||
Protein Properties | Length: 203aa MW: 23288.2 Da PI: 4.4738 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.7 | 4.1e-13 | 28 | 66 | 10 | 48 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48 + +e Lee+F +n++p + +e+L++ lgL+ +qVk+WF Sopen09g008530.1 28 QIIEKLEEVFSQNPNPENDVIEQLSEDLGLDATQVKIWF 66 56899********************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0021 | 18 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-10 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.77E-9 | 27 | 66 | No hit | No description |
Pfam | PF00046 | 1.5E-10 | 28 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 28 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.094 | 30 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTSQNDASVG STSGQHIGKS IFQHSYQQII EKLEEVFSQN PNPENDVIEQ LSEDLGLDAT 60 QVKIWFYDKG NDIKAQQILE EKSKIEHLKN KIMYSENFQM CLNLKQQFCA ASNNPEQQRA 120 ILQDLLNEYA KFGEDVMMIS KIIDHFIKDM EGYHDILFSE FESKLDSLGN YKDPKGLDLE 180 LRLGCYKDPN GLDLELKLGL KSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-111 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087606.2 | 1e-147 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like | ||||
TrEMBL | A0A3Q7IVK1 | 1e-138 | A0A3Q7IVK1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g015110.1.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15229 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 3e-11 | homeodomain GLABROUS 11 |