PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g007130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 288aa    MW: 32517.3 Da    PI: 8.2153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g007130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-092469346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      rWT+eE + + +a +++ ++    W  +a++++ g+t ++++  ++ 
  Sopen09g007130.1 24 RWTPEENKVFEEALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 69
                      9********************************.********99986 PP
2Myb_DNA-binding47.63.9e-15133177347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+++++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Sopen09g007130.1 133 PWTEEEHKQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-41971IPR009057Homeodomain-like
PROSITE profilePS512938.2942075IPR017884SANT domain
SMARTSM007174.0E-102173IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-112377IPR009057Homeodomain-like
CDDcd001673.38E-72471No hitNo description
PfamPF002492.2E-72470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12124182IPR009057Homeodomain-like
PROSITE profilePS5129420.565126182IPR017930Myb domain
SuperFamilySSF466892.37E-17128181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17129181IPR006447Myb domain, plants
SMARTSM007173.9E-13130180IPR001005SANT/Myb domain
CDDcd001675.19E-11133178No hitNo description
PfamPF002491.3E-12133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGYLSPATYI KNSSWLFEEN KGTRWTPEEN KVFEEALALF DKDTPDKWYN VAAMIPGKTV  60
NDVIKQYREL VEDISDIEAG LIPVPGYTTS NSFTLEWVNN QDAFHGFKQL YGQSGKRGSS  120
NRSSEHERKK GVPWTEEEHK QFLLGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR SSIHDITVVN LSESKSTSPE DHKSAPSQQA QQHSIMNGMV KTLCEYNSPN  240
QESDITFNSS SGGLMAMPFR GAPSYGLEHG MHNIALQGLQ FGNYNTMC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-182290876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088586.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-102DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q7HYD00.0A0A3Q7HYD0_SOLLC; Uncharacterized protein
STRINGSolyc09g014250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-109MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]