PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g006600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 380aa MW: 40973.3 Da PI: 5.4598 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 67 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + Sopen09g006600.1 67 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 112 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 119 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ Sopen09g006600.1 119 RKPFTDEEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 163 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.332 | 62 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-31 | 64 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-15 | 66 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 68 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-14 | 69 | 111 | No hit | No description |
PROSITE profile | PS51294 | 27.88 | 114 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-18 | 118 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 119 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-13 | 121 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 121 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEKDTPEVQE VTVAVDGFHG GGIGDASIGG GGGGGGVDGG DEEEVLMLED GSGSSDQVRK 60 KTADRVKGPW SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK 120 PFTDEEDRII LQAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCAE HGKLRSDSSN 180 ILEDASAGKS KASSEETQSC GDVNSLKAIE GKDVSSQENQ EANHYEDRSQ EVVQRSDVAN 240 DPRTLFRPVA RISAFSVYGS LNVPESQLQT PRLIPTQAPD LGITKLLEGA FTDRLVPHQC 300 GHGCCGNVNQ EINGSSLLGP EFLDYTEPPS FSSHELAALA TEISNVAWYK SGLENSSIEA 360 TFNPTTRAAC GTSHLPSRPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-41 | 64 | 167 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086719.1 | 0.0 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 3e-95 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A3Q7I0H7 | 0.0 | A0A3Q7I0H7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g011780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 7e-95 | myb domain protein 1 |
Publications ? help Back to Top | |||
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