PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g005680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 290aa    MW: 32480.1 Da    PI: 5.0164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g005680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32115171258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+vers+++p++++itYeg H h
  Sopen09g005680.1 115 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCGAKKQVERSSDEPNTFIITYEGLHLH 171
                       8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.313109174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-29109171IPR003657WRKY domain
SuperFamilySSF1182904.97E-27111171IPR003657WRKY domain
SMARTSM007742.7E-36114173IPR003657WRKY domain
PfamPF031064.7E-26115171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLMEKYSWSY EDELIKELLD DESPFFFAPQ HDSTTSSSDN YCSLDVTKSS ISSFSSWPNN  60
IHDDIESGLS MTSNGVLQSH DARNLGLGRG LDMMMNKHEA KYTLRIQTCG NAMADDGYKW  120
RKYGQKSIKN SPYPRSYYKC TNPRCGAKKQ VERSSDEPNT FIITYEGLHL HFAYPIITLD  180
PPQSLNQPNK KPKVTDSKAH NYESENTSEV DESPILVNPC PIVDLEQGLG FSEMGSQGLG  240
LDRMGSQGLL EDMVPLMVRN PSINKPTNSY SSSCSYSSPP TSPSFSWSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-211131711674Probable WRKY transcription factor 4
2lex_A1e-211131711674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086698.10.0probable WRKY transcription factor 49
TrEMBLA0A3Q7I0111e-175A0A3Q7I011_SOLLC; Uncharacterized protein
STRINGSolyc09g010960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-42WRKY DNA-binding protein 49