PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g005640.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 761aa MW: 85861.4 Da PI: 5.849

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g005640.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.3	8e-115	387	759	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++l+++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ sP+ k+ Sopen09g005640.1 387 LRTLMINCAQAVAADDSRIANELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFRKI 476 57899*********************************************************999998...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s ++ N++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak Sopen09g005640.1 477 SSFASNKTIMLKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPRLRITGIEFPQPGfrPAERIEETGRRLADYARSFNVPFEYHA-IAK 568 *******************************************************9*************************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++e+L+++++E laVn+ ++ ++l+de+ ++es r+ vL+lv++++P+++v+ + ++++ F++rf eal ++salfd le+ +pr Sopen09g005640.1 569 KWESITVEDLKLDKDEFLAVNCLYRFKNLHDETIAVESSRTIVLNLVRKINPDIFVHGIVNGAYSAPFFVTRFREALFHFSALFDILETIVPR 661 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 e er+ +Ere++gre+ nv+aceg er+er et+++W++r++ a F+++p++ + +++a +r + + + ++e+s++l+lgWk+r++++ Sopen09g005640.1 662 EIPERRLIEREIFGREALNVIACEGWERVERPETYKQWQARIMGARFTQIPFDREeFVNKAIEKVRLGYHRDFVIDEDSQWLLLGWKGRTIYA 754 ************************************************86515677777888888788***************** PP GRAS 370 vSaWr 374 +S+W+ Sopen09g005640.1 755 LSCWK 759 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.233	361	738	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-112	387	759	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MDPRFNGHRS SLNNFRFGNQ PLPFSSEQRM INGPRFGLIY SDQNLLNGPR LENNFVQHDF 60 GAVGFISGDH LPTSVESRTD LGVENDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES 120 LELQAKEKSL YEALGKKYPP SPEQNMFTAR NSESPDDYVA GSIYNSTSNT GDSSGYLVDP 180 RGVNISTNCN SSYFEGLSFH NTSSVCSSNS GSNVVDGFLD SPVSSFHIPD IYDESQSILN 240 FQKGVEEASK FLPTSNKLLN SIDINLLPSR EPQRQTAYAA SQVEEKDEGE TSPTEARGKK 300 NPLSGDNNIE EERSSKQAAV FTESTLRSEE FDIVLLNSMG KGGEALEAYQ QNLRNAKSKT 360 TVQISKGSKG GKGRGKKQGG KKEVIDLRTL MINCAQAVAA DDSRIANELL KQIRQHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADL LKAYHLYLAS SPFRKISSFA 480 SNKTIMLKAE NATRVHVIDF GILYGFQWPT FIQRIAEREG GPPRLRITGI EFPQPGFRPA 540 ERIEETGRRL ADYARSFNVP FEYHAIAKKW ESITVEDLKL DKDEFLAVNC LYRFKNLHDE 600 TIAVESSRTI VLNLVRKINP DIFVHGIVNG AYSAPFFVTR FREALFHFSA LFDILETIVP 660 REIPERRLIE REIFGREALN VIACEGWERV ERPETYKQWQ ARIMGARFTQ IPFDREEFVN 720 KAIEKVRLGY HRDFVIDEDS QWLLLGWKGR TIYALSCWKP V

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MDPRFNGHRS SLNNFRFGNQ PLPFSSEQRM INGPRFGLIY SDQNLLNGPR LENNFVQHDF  60
GAVGFISGDH LPTSVESRTD LGVENDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES  120
LELQAKEKSL YEALGKKYPP SPEQNMFTAR NSESPDDYVA GSIYNSTSNT GDSSGYLVDP  180
RGVNISTNCN SSYFEGLSFH NTSSVCSSNS GSNVVDGFLD SPVSSFHIPD IYDESQSILN  240
FQKGVEEASK FLPTSNKLLN SIDINLLPSR EPQRQTAYAA SQVEEKDEGE TSPTEARGKK  300
NPLSGDNNIE EERSSKQAAV FTESTLRSEE FDIVLLNSMG KGGEALEAYQ QNLRNAKSKT  360
TVQISKGSKG GKGRGKKQGG KKEVIDLRTL MINCAQAVAA DDSRIANELL KQIRQHSSPF  420
GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADL LKAYHLYLAS SPFRKISSFA  480
SNKTIMLKAE NATRVHVIDF GILYGFQWPT FIQRIAEREG GPPRLRITGI EFPQPGFRPA  540
ERIEETGRRL ADYARSFNVP FEYHAIAKKW ESITVEDLKL DKDEFLAVNC LYRFKNLHDE  600
TIAVESSRTI VLNLVRKINP DIFVHGIVNG AYSAPFFVTR FREALFHFSA LFDILETIVP  660
REIPERRLIE REIFGREALN VIACEGWERV ERPETYKQWQ ARIMGARFTQ IPFDREEFVN  720
KAIEKVRLGY HRDFVIDEDS QWLLLGWKGR TIYALSCWKP V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-49	370	760	1	379	Protein SCARECROW
5b3h_D	2e-49	370	760	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086283.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3Q7IU67	0.0	A0A3Q7IU67_SOLLC; Uncharacterized protein
STRING	Solyc09g010920.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein