PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g004970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 316aa    MW: 35406.4 Da    PI: 7.5695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g004970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.3e-3328142199
                       EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                       f+k ltpsdv+k++rlv+pk++ae++                +g +e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L++g
  Sopen09g004970.1  28 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgsnnsnsnnnniDGGTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAG 120
                       99*******************************99999999955567999******************************************* PP

                       -EEEEEE-SSSEE..EEEEE-S CS
                B3  78 DfvvFkldgrsefelvvkvfrk 99 
                       D+v+F ++++++ +l+++++r+
  Sopen09g004970.1 121 DIVLFDRHRSDTDRLFIGWRRR 142
                       ******98889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-4121151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3025141IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-2826132No hitNo description
PfamPF023621.5E-3028143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.43828143IPR003340B3 DNA binding domain
SMARTSM010192.5E-2828143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNNNSTNEDD ELVQNEDKFE EIPRDHLFEK PLTPSDVGKL NRLVIPKQHA EKYFPLSGSN  60
NSNSNNNNID GGTEKGLLLS FEDESGKSWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLDAG  120
DIVLFDRHRS DTDRLFIGWR RRNITSASIS TAAAVRHNTA AAMTGNIGGG GGGGGWAHVY  180
YGGHPYPRAG AGLPYQPDCL HAGRGAMQNQ TTTSVNNNTR RHVRLFGVNL ECEADDSSWS  240
EPPPTPDGGG SSTSSHHQDH GRSQDQASQH YYQYQFQYSK PHVAVSATAS SYNNNHHNHK  300
DMNFSRDVNQ MRYHQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-51241424113B3 domain-containing transcription factor NGA1
5os9_B9e-51241424113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086241.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ23e-67Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A3Q7ITT70.0A0A3Q7ITT7_SOLLC; Uncharacterized protein
STRINGSolyc09g010230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-60B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]