PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g004050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 124aa    MW: 14692.2 Da    PI: 9.8185
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g004050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.89.5e-182798287358
              GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                       +el++r+i+n++a eg++ +erhe ++kWr+ +e+ GF+   ++e++  q  +ll++++ + yr+ ++ +s 
  Sopen09g004050.1  27 EELFARDIRNIIAREGRDMTERHECFGKWRKLMEQGGFRCTGITERELLQSPMLLKMYSYEDYRITKQGKSN 98 
                       567********************************************************888***9886654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.837194IPR005202Transcription factor GRAS
PfamPF035143.3E-152798IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSLFWKLSLN LLVSVFHWTA LLGFKTEELF ARDIRNIIAR EGRDMTERHE CFGKWRKLME  60
QGGFRCTGIT ERELLQSPML LKMYSYEDYR ITKQGKSNLF IHSYTEAIVL FVHGTKRQQI  120
LLVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245645.15e-39scarecrow-like protein 28
SwissprotQ9CAN31e-16SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3Q7HTU51e-37A0A3Q7HTU5_SOLLC; Uncharacterized protein
TrEMBLM0ZTN71e-38M0ZTN7_SOLTU; Uncharacterized protein
STRINGSolyc08g080400.1.12e-38(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-19GRAS family protein