PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g003640.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 559aa MW: 60962.6 Da PI: 7.4365 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 58.1 | 2.3e-18 | 146 | 232 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea+ e+ +l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ + s++p+f+q+e Sopen09g003640.2 146 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GLTISHWPWFKQME 232 5*************************************767778899************************98.88999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.7E-21 | 144 | 234 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 8.5E-67 | 307 | 552 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 1.57E-53 | 313 | 552 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.534 | 313 | 553 | IPR015963 | Uridylate kinase, bacteria |
PRINTS | PR00474 | 1.4E-5 | 315 | 329 | IPR001057 | Glutamate/acetylglutamate kinase |
CDD | cd04254 | 2.02E-110 | 316 | 553 | No hit | No description |
Pfam | PF00696 | 4.9E-23 | 317 | 532 | IPR001048 | Aspartate/glutamate/uridylate kinase |
PRINTS | PR00474 | 1.4E-5 | 459 | 486 | IPR001057 | Glutamate/acetylglutamate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MASCDDDFSL LGDDNAAVAV TPTTTTANPN YHHQPFSSVR YKPVQIHPPP ISAGSPKNIS 60 GDEDDGDGYS DNNAQSYHIG VNPYENDSIP FENDTNVNRS RGKSSNEKRA DREDISDNGT 120 PYSYKRSRIS SSSGSGSGEY RKDREEWSDT AIACLLEAYM EKFVQLNRGN LRGRDWEEVA 180 AMVSERCEKQ SKSVEQCKNK VDNLKKRYKL ERHRMSNGGL TISHWPWFKQ MEQIVGNSIS 240 VKATSEEDKA IVPMNNSSTG RQPKSCCLPL IKILNLAIVP MNNSSTGRQP KRYGTAVPSP 300 SGQIVKAKSS MSPRWRRVVL KISGAALAGM TPNTNDANNI DPKVATLLAA EVSIACRLGI 360 EVAIVVGGRN FFCGETWVTS TGLERCTAYQ IGMMATLMNS ILLQSALEKV GVQTRVQSAF 420 NMPELTEPYS RQRAMRHLEK GRVVIFGGIG AGTGNPLFST DTVAALRASE IHADAILKAT 480 NVDGVYVCDS RNNNVVAEHI SFRELVSGGD SPLDLMAVTL CEENAFPVVI FNLHGPGNLS 540 RALCGEQVGT LIDQTGRVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek5_B | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek5_C | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek5_D | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek5_E | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek5_F | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_A | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_B | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_C | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_D | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_E | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
3ek6_F | 1e-56 | 315 | 552 | 9 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086218.1 | 0.0 | uncharacterized protein LOC107029340 | ||||
TrEMBL | A0A3Q7HYY4 | 0.0 | A0A3Q7HYY4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g008850.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8728 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |