PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g003600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 179aa MW: 20712.6 Da PI: 9.9273 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 32 | 84 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Sopen09g003600.1 32 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 84 55699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.4e-39 | 31 | 122 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke Sopen09g003600.1 31 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAILKE 122 9**************************************************************************************88875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 15 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-17 | 28 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-17 | 31 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-15 | 31 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 33 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.7E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.7E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-7 | 86 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKHAMQTQHG GVQVPTMDNN NFVLNQHQLD KKKRLSSDQL ESLENSFQEE IKLDPDRKMK 60 LAKELGLQPR QIAVWFQNRR ARWKAKQLER LYDSLKQDYD VVSREKQKLQ DEVLALRAIL 120 KEQATKKQVN STVYTEISGE ETVESTSMPS SNKTITRGIT INGLNPVMPP YWATLPTYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087425.1 | 1e-123 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 2e-51 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A3Q7HWL5 | 1e-117 | A0A3Q7HWL5_SOLLC; Uncharacterized protein | ||||
TrEMBL | M0ZS81 | 1e-117 | M0ZS81_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g008810.2.1 | 1e-118 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400006949 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-54 | homeobox 51 |
Publications ? help Back to Top | |||
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