PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g003210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 122aa    MW: 14427.7 Da    PI: 10.4306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g003210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-16855148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W  eEde+l+ +++ lG ++W++ a+  g++R++k+c++rw +yl
  Sopen09g003210.1  8 KGPWLDEEDERLAYVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 55
                      79********************************************97 PP

2Myb_DNA-binding54.62.6e-1764106448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l
  Sopen09g003210.1  64 ITQDEEHLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106
                       59*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.055355IPR017930Myb domain
SuperFamilySSF466891.76E-276102IPR009057Homeodomain-like
SMARTSM007172.2E-12757IPR001005SANT/Myb domain
PfamPF002491.8E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-20962IPR009057Homeodomain-like
CDDcd001674.40E-81055No hitNo description
PROSITE profilePS5129426.19956110IPR017930Myb domain
SMARTSM007173.6E-1460108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2563109IPR009057Homeodomain-like
PfamPF002492.9E-1564106IPR001005SANT/Myb domain
CDDcd001676.94E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEEEKLRKGP WLDEEDERLA YVIAILGERR WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGHITQDEEH LIIKLQKQLG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKT LICEQGSIQP  120
SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2761102105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754489e-69HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086827.16e-85transcription factor MYB27-like
SwissprotQ9SCP11e-51MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3Q7HYP82e-81A0A3Q7HYP8_SOLLC; Uncharacterized protein
STRINGSolyc09g008390.1.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-54myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]