PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g002830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 201aa MW: 21304 Da PI: 8.0775 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.4 | 1.5e-35 | 43 | 120 | 6 | 83 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++ s Sopen09g002830.1 43 SSSKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTVPATQVTTTSENIPLS 120 579*********************************************************999997774433333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-31 | 44 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.319 | 45 | 99 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGSEIVVSGA ISGVGNGSVN SETNGKTALA VVPTKKRNAL SVSSSKDRHT KVNGRGRRVR 60 MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTVPATQV TTTSENIPLS 120 QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL 180 LLQPVTTDDG EEKVAEEDEK Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086656.1 | 1e-147 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 1e-41 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A3Q7HYI7 | 1e-144 | A0A3Q7HYI7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g008030.1.1 | 1e-145 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 5e-36 | TCP family protein |